Index

A

add() (pewlib.laser.Laser method)

B

beta() (in module pewlib.process.convolve)

binned_masses() (pewlib.io.imzml.ImzML method)

C

Calibration (class in pewlib.calibration) collect_datafiles() (in module pewlib.io.agilent) Config (class in pewlib.config)

convolve() (in module pewlib.process.convolve) costes() (in module pewlib.process.colocal) costes_threshold() (in module pewlib.process.colocal)

D

data_extent() (pewlib.config.Config method)

deconvolve() (in module pewlib.process.convolve)

E

elements (pewlib.laser.Laser property) erf() (in module pewlib.process.convolve) erfinv() (in module pewlib.process.convolve)

exponential() (in module pewlib.process.convolve) extent (pewlib.laser.Laser property) extract_masses() (pewlib.io.imzml.ImzML method) extract_tic() (pewlib.io.imzml.ImzML method)

F

fast_parse_imzml() (in module pewlib.io.imzml) filter() (pewlib.io.csv.GenericOption method) from_etree() (pewlib.io.imzml.ImzML class method) from_file() (pewlib.io.imzml.ImzML class method)

from_list() (pewlib.laser.Laser class method) from_points() (pewlib.calibration.Calibration class method) from_xml_element() (pewlib.io.imzml.ParamGroup class method) (pewlib.io.imzml.ScanSettings class method) (pewlib.io.imzml.Spectrum class method)

G

gamma() (in module pewlib.process.convolve) GenericOption (class in pewlib.io.csv) get() (pewlib.laser.Laser method) get_binary_data() (pewlib.io.imzml.Spectrum method)

get_pixel_height() (pewlib.config.Config method) (pewlib.config.SpotConfig method) get_pixel_width() (pewlib.config.Config method) (pewlib.config.SpotConfig method) guess_delay_from_data() (in module pewlib.io.laser)

I

ImzML (class in pewlib.io.imzml) inversegamma() (in module pewlib.process.convolve)

is_valid_directory() (in module pewlib.io.csv) (in module pewlib.io.perkinelmer)

L

laplace() (in module pewlib.process.convolve) Laser (class in pewlib.laser) li_icq() (in module pewlib.process.colocal) load() (in module pewlib.io.agilent) (in module pewlib.io.csv) (in module pewlib.io.imzml) (in module pewlib.io.npz) (in module pewlib.io.perkinelmer) (in module pewlib.io.textimage)

load_binary() (in module pewlib.io.agilent) load_csv() (in module pewlib.io.agilent) load_info() (in module pewlib.io.agilent) local_maxima() (in module pewlib.process.calc) loglaplace() (in module pewlib.process.convolve) lognormal() (in module pewlib.process.convolve)

M

manders() (in module pewlib.process.colocal) mass_range() (pewlib.io.imzml.ImzML method) module pewlib.calibration pewlib.config pewlib.io.agilent pewlib.io.csv pewlib.io.imzml pewlib.io.laser pewlib.io.npz pewlib.io.perkinelmer pewlib.io.textimage pewlib.io.vtk pewlib.laser pewlib.process.calc pewlib.process.colocal pewlib.process.convolve pewlib.process.filters pewlib.process.threshold

N

normal() (in module pewlib.process.convolve)

normalise() (in module pewlib.process.calc) NuOption (class in pewlib.io.csv)

O

option_for_path() (in module pewlib.io.csv)

otsu() (in module pewlib.process.threshold)

P

ParamGroup (class in pewlib.io.imzml) pearsonr() (in module pewlib.process.colocal) pearsonr_probablity() (in module pewlib.process.colocal) pewlib.calibration module pewlib.config module pewlib.io.agilent module pewlib.io.csv module pewlib.io.imzml module pewlib.io.laser module pewlib.io.npz module

pewlib.io.perkinelmer module pewlib.io.textimage module pewlib.io.vtk module pewlib.laser module pewlib.process.calc module pewlib.process.colocal module pewlib.process.convolve module pewlib.process.filters module pewlib.process.threshold module

R

readParams() (pewlib.io.csv.GenericOption method) (pewlib.io.csv.NuOption method) (pewlib.io.csv.ThermoLDROption method) (pewlib.io.csv.TofwerkOption method)

remove() (pewlib.laser.Laser method) rename() (pewlib.laser.Laser method) reset_cumsum() (in module pewlib.process.calc) rolling_mean() (in module pewlib.process.filters) rolling_median() (in module pewlib.process.filters)

S

save() (in module pewlib.io.npz) (in module pewlib.io.textimage) (in module pewlib.io.vtk) ScanSettings (class in pewlib.io.imzml) shuffle_blocks() (in module pewlib.process.calc) sort() (pewlib.io.csv.GenericOption method) sortkey() (pewlib.io.csv.NuOption method) (pewlib.io.csv.ThermoLDROption method) (pewlib.io.csv.TofwerkOption method)

Spectrum (class in pewlib.io.imzml) SpotConfig (class in pewlib.config) subpixel_offset() (in module pewlib.process.calc) subpixel_offset_equal() (in module pewlib.process.calc) super_gaussian() (in module pewlib.process.convolve) sync_data_nwi_laser_log() (in module pewlib.io.laser)

T

ThermoLDROption (class in pewlib.io.csv) to_array() (pewlib.calibration.Calibration method)

TofwerkOption (class in pewlib.io.csv) triangular() (in module pewlib.process.convolve)

U

untargeted_extraction() (pewlib.io.imzml.ImzML method)

V

validForPath() (pewlib.io.csv.GenericOption method)

view_as_blocks() (in module pewlib.process.calc)

W

weighted_linreg() (in module pewlib.calibration)

weighted_rsq() (in module pewlib.calibration) weights_from_weighting() (in module pewlib.calibration)